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Worktrees land; Copilot resolves merge conflicts

v3.6

3 features1 enhancementThis release3 featuresNew capabilities1 enhancementImprovements to existing featuresAI-tallied from the release notes

GitHub Desktop with a new Current Worktree menu in the top toolbar, alongside Current Repository and Current Branch. The open menu lists the main worktree mona on branch main, and linked worktrees hotfix (selected) and side-project, each on its own branch, with a New Worktree button to create more.

GitHub Desktop 3.6 brings more of your day-to-day Git flow into one place with GitHub Copilot now powering commit authoring and merge conflict resolution, plus new Git worktree support.

The problem

More and more development happens with the help of AI and coding agents, which raises the bar for the everyday Git moments in between. A few of those moments still pull you away from your flow: commit authoring needs more control and better alignment with repository standards, merge conflicts remain one of the most intimidating Git workflows, and working across multiple branches at once often means stashing changes, switching branches repeatedly, or creating extra clones.

A new foundation for Copilot

Copilot in GitHub Desktop now runs on the Copilot SDK, the shared foundation behind both the enhanced commit message experience and the new merge conflict workflow.

Beyond those features, the SDK also unlocks more flexibility in how Copilot runs. Every Copilot feature in GitHub Desktop now includes a model picker so you can choose from the models available to you through GitHub. You can also use bring your own key (BYOK) to connect a third-party provider or a model running locally on your machine.

Author commits with more control

GitHub Desktop’s commit message generation feature is now more powerful and customizable. It picks up custom instructions from your .github/copilot-instructions.md and AGENTS.md files, and honors commit metadata rules defined for your repository. This way generated messages match your style and stay within your repository’s standards.

GitHub Desktop commit authoring dialog showing a model picker for Copilot-powered commit message generation

GitHub Desktop showing detailed information about the selected model for commit message generation

Resolve conflicts with Copilot

Merge conflicts are now easier to navigate with AI-assisted resolution in GitHub Desktop. When you hit a conflict, Desktop can help explain the conflicting changes and suggest a resolution that you can review, accept, or edit before completing the merge.

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Work across branches in parallel

GitHub Desktop now supports Git worktrees, so you can work across multiple branches at once without repeatedly stashing changes, switching branches, or cloning the same repository. This is especially handy alongside coding agents, which often spin up worktrees to run isolated, parallel sessions.

GitHub Desktop with a new Current Worktree menu in the top toolbar, alongside Current Repository and Current Branch. The open menu lists the main worktree mona on branch main, and linked worktrees hotfix (selected) and side-project, each on its own branch, with a New Worktree button to create more.

Getting started

GitHub Desktop 3.6.0 is available now for macOS and Windows. GitHub Desktop is free to download and use, and Copilot-powered features require access to GitHub Copilot.

Automatic updates roll out progressively, or you can download the latest release from github.com/apps/desktop. To learn more about these workflows, see the GitHub Desktop documentation.

Have feedback or found an issue? Open an issue in the desktop/desktop repository.

The post GitHub Desktop 3.6: Worktrees and deeper Copilot integration appeared first on The GitHub Blog.

Fetched June 26, 2026